PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g068480.1.1
Common NameLOC101260506
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 176aa    MW: 19867.2 Da    PI: 4.6421
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g068480.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.86.2e-1426121797
               NF-YB   7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                          lP + v r++k+ l    +++ is  +d+     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f + +eplk+ l+ +re
  Solyc11g068480.1.1  26 GLPKTIVRRLVKEKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPELIEPLKASLEGFRE 116
                         578888888888765411156666644677888899******************************************************* PP

               NF-YB  93 legek 97 
                          ++++
  Solyc11g068480.1.1 117 KNSKR 121
                         88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-3117162IPR009072Histone-fold
SuperFamilySSF471135.37E-2426135IPR009072Histone-fold
PfamPF008082.5E-82795IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAEIEKQNKE KEKVVAETTV QIDQEGLPKT IVRRLVKEKL SQLSTDTDIS LLRDSLLAFS  60
ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF PELIEPLKAS LEGFREKNSK  120
RKSTSSKSPE SNKKAKLKEP VENGKGKMKE QPSDNENEDA QAEEEVNEVE DRVDD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.164950.0cell culture| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170041e-119Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251060.11e-122PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLK4DA061e-122K4DA06_SOLLC; Uncharacterized protein
STRINGSolyc11g068480.1.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-30nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]